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Table 1 The scores and threshold values for MASCOT, OMSSA, and MS-BLAST.

From: OpenKnowledge for peer-to-peer experimentation in protein identification by MS/MS

Peer Name of score Threshold References
MASCOT MASCOT score ≥ 30 Perkins et al., 1999
OMSSA E-value ≤ 0.1 Geer et al., 2004
MS-BLAST MS-BLAST score ≥ 57 Habermann et al., 2004
  1. The results given scores by MASCOT, OMSSA, MS-BLAST were classified to be successes or failures according to their respective thresholds.