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Table 1 The scores and threshold values for MASCOT, OMSSA, and MS-BLAST.

From: OpenKnowledge for peer-to-peer experimentation in protein identification by MS/MS

Peer

Name of score

Threshold

References

MASCOT

MASCOT score

≥ 30

Perkins et al., 1999

OMSSA

E-value

≤ 0.1

Geer et al., 2004

MS-BLAST

MS-BLAST score

≥ 57

Habermann et al., 2004

  1. The results given scores by MASCOT, OMSSA, MS-BLAST were classified to be successes or failures according to their respective thresholds.