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  1. Research

    P2P proteomics -- data sharing for enhanced protein identification

    In order to tackle the important and challenging problem in proteomics of identifying known and new protein sequences using high-throughput methods, we propose a data-sharing platform that uses fully distribut...

    Marco Schorlemmer, Joaquín Abián, Carles Sierra, David de la Cruz, Lorenzo Bernacchioni, Enric Jaén, Adrian Perreau de Pinninck and Manuel Atencia

    Automated Experimentation 2012 4:1

    Published on: 31 January 2012

  2. Research

    OpenKnowledge for peer-to-peer experimentation in protein identification by MS/MS

    Traditional scientific workflow platforms usually run individual experiments with little evaluation and analysis of performance as required by automated experimentation in which scientists are being allowed to...

    Siu-wai Leung, Xueping Quan, Paolo Besana, Qian Li, Mark Collins, Dietlind Gerloff and Dave Robertson

    Automated Experimentation 2011 3:3

    Published on: 22 December 2011

  3. Research

    Automated experimentation in ecological networks

    In ecological networks, natural communities are studied from a complex systems perspective by representing interactions among species within them in the form of a graph, which is in turn analysed using mathema...

    Miguel Lurgi and David Robertson

    Automated Experimentation 2011 3:1

    Published on: 9 May 2011

  4. Research

    Combining ontologies and workflows to design formal protocols for biological laboratories

    Laboratory protocols in life sciences tend to be written in natural language, with negative consequences on repeatability, distribution and automation of scientific experiments. Formalization of knowledge is b...

    Alessandro Maccagnan, Mauro Riva, Erika Feltrin, Barbara Simionati, Tullio Vardanega, Giorgio Valle and Nicola Cannata

    Automated Experimentation 2010 2:3

    Published on: 23 April 2010

  5. Review

    Towards Robot Scientists for autonomous scientific discovery

    We review the main components of autonomous scientific discovery, and how they lead to the concept of a Robot Scientist. This is a system which uses techniques from artificial intelligence to automate all aspe...

    Andrew Sparkes, Wayne Aubrey, Emma Byrne, Amanda Clare, Muhammed N Khan, Maria Liakata, Magdalena Markham, Jem Rowland, Larisa N Soldatova, Kenneth E Whelan, Michael Young and Ross D King

    Automated Experimentation 2010 2:1

    Published on: 4 January 2010

  6. Commentary

    Make it better but don't change anything

    With massive amounts of data being generated in electronic format, there is a need in basic science laboratories to adopt new methods for tracking and analyzing data. An electronic laboratory notebook (ELN) is...

    Jerry M Wright

    Automated Experimentation 2009 1:5

    Published on: 19 November 2009

  7. Editorial

    Welcome to Automated Experimentation: a new open access journal

    Modern experimental science provides more opportunities for yet larger series of experiments. Demand for experimental results also has become more diverse, requiring results that have direct connections to sys...

    David Robertson, Siu-wai Leung and Dietlind Gerloff

    Automated Experimentation 2009 1:1

    Published on: 29 October 2009

  8. Review

    The philosophy of scientific experimentation: a review

    Practicing and studying automated experimentation may benefit from philosophical reflection on experimental science in general. This paper reviews the relevant literature and discusses central issues in the ph...

    Hans Radder

    Automated Experimentation 2009 1:2

    Published on: 29 October 2009

  9. Software

    eCAT: Online electronic lab notebook for scientific research

    eCAT is an electronic lab notebook (ELN) developed by Axiope Limited. It is the first online ELN, the first ELN to be developed in close collaboration with lab scientists, and the first ELN to be targeted at r...

    Nigel H Goddard, Rory Macneil and Jonathan Ritchie

    Automated Experimentation 2009 1:4

    Published on: 29 October 2009

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